Rho Guanine Nucleotide Exchange Factor 12

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Rho Guanine Nucleotide Exchange Factor 12
  Conformer 1
(PDB)
1x86 (A)
  Conformer 2
(PDB)
1txd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 0.99   768 - 983
2 132 0.89   984 - 1136

Sequence


           ________________________________________________________________________________________________________________________ 
 1x86(A) : PPNWQQLVSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAA 
         :                                                                                                                          
 1txd(A) : PPNWQQLVSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________977____________________________ 
 1x86(A) : TFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYP 
         :                                                                                                                          
 1txd(A) : TFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSL------ 
           _________________________________________________________________________________________977____________________________ 

           ________________________________________________________________________________________________________________________ 
 1x86(A) : NVEELRNLDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHStFSPVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKE 
         :                                                                                                                          
 1txd(A) : -vEELRNLDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRC--tFSPVIKLSTVLVRQVAT-nKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKE 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 1x86(A) : QS                                                                                                                       
         :                                                                                                                          
 1txd(A) : QS                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
36.4
Translation
(A)
2.3
Closure
(%)
99.8
Bending Residues
( green )
  977 - 984
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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