Ribokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribokinase
  Conformer 1
(PDB) 		1rka (A)
  Conformer 2
(PDB) 		1rkd  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 255 0.55   6 - 14   41 - 68   72 - 97   115 - 306
2 46 0.87   15 - 40   69 - 71   98 - 114

Sequence


           ________13_______________________38___________________________67____________________________97______________114_________ 
 1rka(A) : AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPA 
         :                                                                                                                          
 1rkd    : AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPA 
           ________13_______________________38___________________________67____________________________97______________114_________ 

           ________________________________________________________________________________________________________________________ 
 1rka(A) : LVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGF 
         :                                                                                                                          
 1rkd    : LVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGF 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________                                                       
 1rka(A) : RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQ*                                                       
         :                                                                                                                          
 1rkd    : RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR                                                       
           __________________________________________________________________                                                       

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.8
Translation
(A) 		-0.9
Closure
(%) 		72.8
Bending Residues
( green ) 		  13 - 15
  38 - 42
  67 - 72
  97 - 98
  114 - 117
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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