Ribonuclease Hi

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribonuclease Hi
  Conformer 1
(PDB)
1wsj (E)
  Conformer 2
(PDB)
1wsg (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 102 0.64   3 - 66   68 - 71   104 - 118   129 - 151
2 38 0.86   67 - 67   72 - 103   119 - 123

Sequence


           ________________________________________________________________66__________________________________103____________118__ 
 1wsj(E) : MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 
         :                                                                                                                          
 1wsg(C) : MLKQVEIFTDGSCLGNPGPGGYGAILR----eKTFSAGYTRTTNNRMALMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 
           ________________________________________________________________66__________________________________103____________118__ 

           123________________________________                                                                                      
 1wsj(E) : VKGAAGHPENERCDELARAAAMNPTLEDTGYQV**                                                                                      
         :                                                                                                                          
 1wsg(C) : VKGHAGHPENERCNELARAAAMNPTLEDTGYQVEV                                                                                      
           123________________________________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.3
Translation
(A)
-0.8
Closure
(%)
96.0
Bending Residues
( green )
  66 - 72
  103 - 104
  118 - 119
  123 - 129
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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