Ribonuclease HII

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribonuclease HII
  Conformer 1
(PDB)
1uax (B)
  Conformer 2
(PDB)
1uax (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 104 0.51   3 - 7   22 - 63   89 - 145
2 101 0.46   8 - 21   64 - 88   146 - 207

Sequence


           ______7____________21________________________________________63_______________________88________________________________ 
 1uax(B) : MKVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKA 
         :                                                                                                                          
 1uax(A) : MKVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKA 
           ______7____________21________________________________________63_______________________88________________________________ 

           ______________________145__________________________________________________________________                              
 1uax(B) : GLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKIEERFRKN                              
         :                                                                                                                          
 1uax(A) : GLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKIEERFRKN                              
           ______________________145__________________________________________________________________                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.0
Translation
(A)
0.1
Closure
(%)
93.1
Bending Residues
( green )
  7 - 8
  21 - 22
  63 - 64
  88 - 89
  145 - 146
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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