Ribonuclease HII

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribonuclease HII
  Conformer 1
(PDB)
1io2 (A)
  Conformer 2
(PDB)
2dfe (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 149 1.41   6 - 69   75 - 159
2 45 1.38   70 - 74   160 - 199

Sequence


           _________________________________________________________________67_____________________________________________________ 
 1io2(A) : MKIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGE 
         :                                                                                                                          
 2dfe(A) : MKIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGE 
           _________________________________________________________________67_____________________________________________________ 

           __________________________________157________________________________________________________                            
 1io2(A) : RLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAEKVESEKK                            
         :                                                                                                                          
 2dfe(A) : RLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTTQDMINKST****                            
           __________________________________157________________________________________________________                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.7
Translation
(A)
0.8
Closure
(%)
65.0
Bending Residues
( green )
  67 - 85
  157 - 160
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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