Ribosomal Protein L6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribosomal Protein L6
  Conformer 1
(PDB) 		1rl6 (A)
  Conformer 2
(PDB) 		1yl3 (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 81 1.18   82 - 162
2 73 1.49   9 - 81

Sequence


           _________________________________________________________________________81_____________________________________________ 
 1rl6(A) : PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPS 
         :                                                                                                                          
 1yl3(H) : PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPS 
           _________________________________________________________________________81_____________________________________________ 

           ____________________________________________                                                                             
 1rl6(A) : QTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL                                                                             
         :                                                                                                                          
 1yl3(H) : QTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL                                                                             
           ____________________________________________                                                                             

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.6
Translation
(A) 		-0.2
Closure
(%) 		98.2
Bending Residues
( green ) 		  81 - 82
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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