Ribosomal Small Subunit Pseudouridine Synthase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribosomal Small Subunit Pseudouridine Synthase A
  Conformer 1
(PDB) 		1vio (A)
  Conformer 2
(PDB) 		1vio (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 0.72   55 - 229
2 53 0.4   2 - 54

Sequence


           _____________________________________________________54_________________________________________________________________ 
 1vio(A) : SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCSNDdYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRI 
         :                                                                                                                          
 1vio(B) : SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCSNDdYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRI 
           _____________________________________________________54_________________________________________________________________ 

           ______________________________________________________________________________________________________________           
 1vio(A) : TSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV           
         :                                                                                                                          
 1vio(B) : TSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV           
           ______________________________________________________________________________________________________________           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.1
Translation
(A) 		-0.8
Closure
(%) 		13.2
Bending Residues
( green ) 		  54 - 60
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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