DynDom - Protein Domain Motions

Ribulose-1,5 Bisphosphate Carboxylase/oxygenase Large Subunit N-Methyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Ribulose-1,5 Bisphosphate Carboxylase/oxygenase Large Subunit N-Methyltransferase
Conformer 1 (PDB)	2h23 (A)
Conformer 2 (PDB)	2h21 (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	237	0.84	59 - 79 81 - 81 83 - 87 94 - 94 96 - 96 151 - 152 168 - 173 221 - 223 237 - 237 243 - 251 283 - 469
2	167	0.57	53 - 58 80 - 80 82 - 82 88 - 93 95 - 95 97 - 150 153 - 167 174 - 220 224 - 236 238 - 242 252 - 282

Sequence

`________58___________________79______87____93______________________________________________________150______________167_` `2h23(A) : LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQEL` `:` `2h21(B) : SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQEL` `________58___________________79______87____93______________________________________________________150______________167_` `__173____________________________________________220_____________236___242___248_______________________________282______` `2h23(A) : QGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRL---nLVVVPMADLINHSAGVTTEDHAYEV----------yLFSLKSPLSVKAGEQVYIQYD` `:` `2h21(B) : QGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD` `__173____________________________________________220_____________236___242___248_______________________________282______` `________________________________________________________________________________________________________________________` `2h23(A) : LNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSAL` `:` `2h21(B) : LNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSAL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________` `2h23(A) : AGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLY*` `:` `2h21(B) : AGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLYFQ` `________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	6.4
Translation (A)	-0.4
Closure (%)	93.6
Bending Residues ( green )	58 - 59 79 - 83 87 - 88 93 - 97 150 - 153 167 - 168 173 - 174 220 - 221 223 - 224 236 - 238 242 - 243 248 - 252 282 - 283
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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