RNA Polymerase II Mediator Complex Subunit 18

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name RNA Polymerase II Mediator Complex Subunit 18
  Conformer 1
(PDB)
2hzm (F)
  Conformer 2
(PDB)
2hzm (H)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.67   8 - 73   95 - 307
2 21 3.66   74 - 94

Sequence


           ______________________________________________________70______________________94________________________________________ 
 2hzm(F) : VQQLSLFGSIGDDGYDLLISTLTTISGNPPLLYNSLCTVWKPNPSYpNRIKLSKEVPFSYLIDETMMDKPLNFRILKSFTNDKIPLNYAMeSCSPWSLQISDI-sVSMQTIAETIILSSA 
         :                                                                                                                          
 2hzm(H) : VQQLSLFGSIGDDGYDLLISTLTTISGNPPLLYNSLCTVWKPNPSYpNRIKLSKEVPFSYLIDETMMDKPLNFRILKSFTN----------sCSPWSLQISDIrSVSMQTIAETIILSSA 
           ______________________________________________________70______________________94________________________________________ 

           _______________________________________________________________________________________________________________________  
 2hzm(F) : GKNSSVSSLMNGLGYVFEFQYLTIGVKFFMKHGLILELQKIWQIEEAGNSQITSGGFLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDRQSMDSRVAHGNILIAAALEH  
         :                                                                                                                          
 2hzm(H) : GKNSSVSSLMNGLGYVFEFQYLTIGVKFFMKHGLILELQKIWQIEEAGNSQITSGGFLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVP---sMDSRVAHGNILIAAALEH  
           _______________________________________________________________________________________________________________________  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
42.2
Translation
(A)
-1.1
Closure
(%)
58.9
Bending Residues
( green )
  70 - 74
  94 - 165
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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