RNA Uridylyl Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name RNA Uridylyl Transferase
  Conformer 1
(PDB)
2ikf (B)
  Conformer 2
(PDB)
2ikf (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 222 1.93   6 - 29   50 - 58   92 - 95   140 - 329
2 77 1.53   30 - 49   59 - 91   96 - 139

Sequence


           _________________________29__________________49_______58_______________________________91__95___________________________ 
 2ikf(B) : PSPAVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVD--mRLYTFGSTVVYGVHEKGSDVDFVVLNKT-------------vAKGLQADILAKLARVIRQKHLSWNVEEV----- 
         :                                                                                                                          
 2ikf(A) : PSPAVVGRSLVNSFKQFVS-----rHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRV 
           _________________________29__________________49_______58_______________________________91__95___________________________ 

           ______________139_______________________________________________________________________________________________________ 
 2ikf(B) : pVVRVKGGGAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVL 
         :                                                                                                                          
 2ikf(A) : PVVRVKGGGAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVL 
           ______________139_______________________________________________________________________________________________________ 

           ___________________________________________________________________________________________                              
 2ikf(B) : DFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTALLTI*                              
         :                                                                                                                          
 2ikf(A) : DFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTALLTIV                              
           ___________________________________________________________________________________________                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.1
Translation
(A)
0.3
Closure
(%)
78.0
Bending Residues
( green )
  29 - 30
  49 - 50
  58 - 59
  91 - 92
  95 - 96
  139 - 140
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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