R-Specific Alcohol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name R-Specific Alcohol Dehydrogenase
  Conformer 1
(PDB) 		1zk3 (C)
  Conformer 2
(PDB) 		1zk4 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 219 0.26   7 - 187   208 - 245
2 20 0.89   188 - 207

Sequence


           ________________________________________________________________________________________________________________________ 
 1zk3(C) : SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITDRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 
         :                                                                                                                          
 1zk4(A) : SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________185___________________207_________________________________ 
 1zk3(C) : TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGS 
         :                                                                                                                          
 1zk4(A) : TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGS 
           ______________________________________________________________185___________________207_________________________________ 

           ___________                                                                                                              
 1zk3(C) : EFVVDGGYTAQ                                                                                                              
         :                                                                                                                          
 1zk4(A) : EFVVDGGYTAQ                                                                                                              
           ___________                                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.0
Translation
(A) 		0.1
Closure
(%) 		28.1
Bending Residues
( green ) 		  185 - 189
  207 - 222
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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