Ruvb-Like 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ruvb-Like 1
  Conformer 1
(PDB) 		2c9o (A)
  Conformer 2
(PDB) 		2c9o (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 295 0.68   11 - 126   234 - 446
2 93 1.59   127 - 233

Sequence


           ___________________________________________________________________________________________________________________126__ 
 2c9o(A) : TTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETK 
         :                                                                                                                          
 2c9o(B) : TTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETK 
           ___________________________________________________________________________________________________________________126__ 

           _________________________________________________________________________________________233____________________________ 
 2c9o(A) : EVYEGEVTELTPC-hVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANgEINKVVNKYIDQG 
         :                                                                                                                          
 2c9o(B) : EVYEGEVTELTPCsHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLD-----iNKVVNKYIDQG 
           _________________________________________________________________________________________233____________________________ 

           ________________________________________________________________________________________________________________________ 
 2c9o(A) : IAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLL 
         :                                                                                                                          
 2c9o(B) : IAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLL 
           ________________________________________________________________________________________________________________________ 

           _______________________________________                                                                                  
 2c9o(A) : TPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILAD                                                                                  
         :                                                                                                                          
 2c9o(B) : TPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILA*                                                                                  
           _______________________________________                                                                                  

Morph
Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.0
Translation
(A) 		0.6
Closure
(%) 		52.8
Bending Residues
( green ) 		  126 - 127
  233 - 235
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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