S-Adenosylmethionine Synthetase Isoform Type-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name S-Adenosylmethionine Synthetase Isoform Type-1
  Conformer 1
(PDB)
2obv (A)
  Conformer 2
(PDB)
1qm4 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 229 0.83   20 - 107   152 - 187   197 - 261   263 - 282   363 - 366   370 - 385
2 119 0.83   132 - 151   188 - 196   262 - 262   283 - 362   367 - 369   386 - 391

Sequence


           _____________________________________________________________________________________________107________________________ 
 2obv(A) : FQSMGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVG 
         :                                                                                                                          
 1qm4(A) : ****GAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSP------------eDVG 
           _____________________________________________________________________________________________108________________________ 

           _________________151_________________________________187_____195______________________________________________________25 
 2obv(A) : AGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFV 
         :                                                                                                                          
 1qm4(A) : AGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFV 
           _________________152_________________________________188_____196______________________________________________________25 

           2___________________________282__________________________________________________________________________359____366_____ 
 2obv(A) : IGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKKPIY 
         :                                                                                                                          
 1qm4(A) : IGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIY 
           3___________________________283__________________________________________________________________________360____367_____ 

           ___________385__________                                                                                                 
 2obv(A) : QKTACYGHFGRSEFPWEVPRKLVF                                                                                                 
         :                                                                                                                          
 1qm4(A) : QKTACYGHFGRSEFPWEVPKKLVF                                                                                                 
           ___________386__________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
-0.4
Closure
(%)
99.7
Bending Residues
( green )
  107 - 133
  151 - 152
  187 - 189
  195 - 197
  252 - 263
  282 - 283
  359 - 363
  366 - 367
  369 - 370
  385 - 386
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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