Sdai Restriction Endonuclease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sdai Restriction Endonuclease
  Conformer 1
(PDB) 		2ixs (A)
  Conformer 2
(PDB) 		2ixs (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 183 1.37   139 - 321
2 132 0.58   7 - 138

Sequence


           ________________________________________________________________________________________________________________________ 
 2ixs(A) : NDIDETAATIDTARALLKSFGFEAQRHNVRSAVTLLALAGLKPGDHWADSTTPRLGVQKIMDWSGAYWAKPYATGSREDFRKKTLRQWVDNGFAVLNPDNLNIATNSQLNEYCLSDEAAQ 
         :                                                                                                                          
 2ixs(B) : NDIDETAATIDTARALLKSFGFEAQRHNVRSAVTLLALAGLKPGDHWADSTTPRLGVQKIMDWSGAYWAKPYATGSREDFRKKTLRQWVDNGFAVLNPDNLNIATNSQLNEYCLSDEAAQ 
           ________________________________________________________________________________________________________________________ 

           ___________138__________________________________________________________________________________________________________ 
 2ixs(A) : AIRSYGTDAFESALVDFLSKASDTVRARAEALRAAMISVDLADGDEFLLSPAGQNPLLKKMVEEFMPRFAPGAKVLYIGDTRGKHTRFEKRIFEETLGLTFDPHGRMPDLVLHDKVRKWL 
         :                                                                                                                          
 2ixs(B) : AIRSYGTDAFESALVDFLSKASDTVRARAEALRAAMISVDLADGDEFLLSPAGQNPLLKKMVEEFMPRFAPGAKVLYIGDTRGKHTRFEKRIFEETLGLTFDPHGRMPDLVLHDKVRKWL 
           ___________138__________________________________________________________________________________________________________ 

           _______________________________________________________________________________                                          
 2ixs(A) : FLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENREAMRQWLPELAWETEAWVADDPDHLIHLNGSRFLGPYER                                          
         :                                                                                                                          
 2ixs(B) : FLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENREAMRQWLPELAWETEAWVADDPDHLIHLNGSRFLGPYER                                          
           _______________________________________________________________________________                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.6
Translation
(A) 		0.2
Closure
(%) 		100.0
Bending Residues
( green ) 		  138 - 139
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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