Serralysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Serralysin
  Conformer 1
(PDB)
1g9k (A)
  Conformer 2
(PDB)
1o0q (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 295 0.52   6 - 32   43 - 43   45 - 54   57 - 58   176 - 179   200 - 230   233 - 240   247 - 460
2 151 0.34   33 - 42   44 - 44   55 - 56   59 - 175   180 - 199   231 - 232   241 - 246

Sequence


           ____________________________32________42___47___________________________________________________________________________ 
 1g9k(A) : GTSSAFTQIDNFSHFYDRGDHLVNGKPSFTVDQVADQLTRSGASWHDLNNDGVINLTYTFLTAPPVGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAAR-dDGHMTFANF 
         :                                                                                                                          
 1o0q(A) : GTSSAFTQIDNFSHFYDRGDHLVNGKPSFTVDQVADQLTRSGASWHD--nDGVINLTYTFLTAPPVGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANF 
           ____________________________32________42___47___________________________________________________________________________ 

           __________________________________________________175_179____________199____________________________230_______240___246_ 
 1g9k(A) : SASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYnPTYRDAVYAEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANL 
         :                                                                                                                          
 1o0q(A) : SASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGD-nPTYRDAVYAEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANL 
           __________________________________________________175_179____________199____________________________230_______240___246_ 

           ________________________________________________________________________________________________________________________ 
 1g9k(A) : ETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWDGGGNDTLDFSGFSQNQKINLTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLIGNDAANVLKGGAGNDIIYGGGGADVLWGG 
         :                                                                                                                          
 1o0q(A) : ETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWDGGGNDTLDFSGFSQNQKINLTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLIGNDAANVLKGGAGNDIIYGGGGADVLWGG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________                         
 1g9k(A) : TGSDTFVFGAVSDSTPKAADIIKDFQSGFDKIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQVDFSGQGVADFLVTTVGQVATYDIVA                         
         :                                                                                                                          
 1o0q(A) : TGSDTFVFGAVSDSTPKAADIIKDFQSGFDKIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQVDFSGQGVADFLVTTVGQVATYDIVA                         
           ________________________________________________________________________________________________                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.4
Translation
(A)
0.1
Closure
(%)
100.0
Bending Residues
( green )
  32 - 33
  42 - 45
  47 - 59
  175 - 176
  179 - 180
  199 - 200
  230 - 233
  240 - 241
  246 - 247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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