Seryl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Seryl-Trna Synthetase
  Conformer 1
(PDB)
2cja (A)
  Conformer 2
(PDB)
2cja (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 311 0.43   165 - 500
2 142 0.88   3 - 158

Sequence


           ________________________________________________________________________________________________________________________ 
 2cja(A) : *SHkLQFNLKAYFK--------kDAIAALFEEANSTLLTRGAPEGQGAKVTEWKL---rIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRlKVPYI 
         :                                                                                                                          
 2cja(B) : GSHkLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRlKVPYI 
           ________________________________________________________________________________________________________________________ 

           __________________________________158___________________________________________________________________________________ 
 2cja(A) : KSeNIEGGIQLELEVGEAEkNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPeHPFKEDPTQAkEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREiFPKLVTWEVW 
         :                                                                                                                          
 2cja(B) : KSeNIEGGIQLELEVGEAEkNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPeHPFKEDPTQAkEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREiFPKLVTWEVW 
           __________________________________158___________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cja(A) : kSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGcYAQCPPFWyVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKC 
         :                                                                                                                          
 2cja(B) : kSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGcYAQCPPFWyVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKC 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________________________     
 2cja(A) : AEELHDRYhIFNDILDIEWRKARVnTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPANWPEEFRNRVGEpKGIRFL     
         :                                                                                                                          
 2cja(B) : AEELHDRYhIFNDILDIEWRKARVnTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPANWPEEFRNRVGEpKGIRFL     
           ____________________________________________________________________________________________________________________     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.2
Translation
(A)
0.7
Closure
(%)
78.5
Bending Residues
( green )
  158 - 170
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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