S45-2 Fab (Igg1k) Light Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name S45-2 Fab (Igg1k) Light Chain
  Conformer 1
(PDB) 		1q9o (C)
  Conformer 2
(PDB) 		2g5b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 108 0.59   3 - 104
2 104 0.58   105 - 208

Sequence


           ___________________________________________________________________________________________________________104__________ 
 1q9o(C) : DIVMSQFPSSLAVSAGEKVTMSCKSSQSLLNSRTRKSYLAWYQQKPGQFPKLLIYWAATRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAPTV 
         :                                                                                                                          
 2g5b(A) : DIVMSQSPSSLAVSAGERVTMTCKSSQSLFNSKTRRNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTEFTLTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAPTV 
           ___________________________________________________________________________________________________________104__________ 

           ___________________________________________________________________________________________________                      
 1q9o(C) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                      
         :                                                                                                                          
 2g5b(A) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN**                      
           ___________________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.4
Translation
(A) 		-0.4
Closure
(%) 		77.6
Bending Residues
( green ) 		  104 - 105
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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