Shikimate 5'-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Shikimate 5'-Dehydrogenase
  Conformer 1
(PDB)
1nvt (A)
  Conformer 2
(PDB)
1nvt (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 143 0.37   3 - 114   255 - 285
2 140 0.48   115 - 254

Sequence


           ______________________________________________________________________________________________________________113_______ 
 1nvt(A) : GPLGSMINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIEDGKAIGYNTDGIGARMALE 
         :                                                                                                                          
 1nvt(B) : GPLGSMINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIEDGKAIGYNTDGIGARMALE 
           ______________________________________________________________________________________________________________113_______ 

           ________________________________________________________________________________________________________________________ 
 1nvt(A) : EEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLK 
         :                                                                                                                          
 1nvt(B) : EEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLK 
           ________________________________________________________________________________________________________________________ 

           ___________254_________________________________                                                                          
 1nvt(A) : EAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKITK                                                                          
         :                                                                                                                          
 1nvt(B) : EAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKITK                                                                          
           ___________254_________________________________                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.2
Translation
(A)
0.3
Closure
(%)
96.9
Bending Residues
( green )
  113 - 116
  254 - 257
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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