Siroheme Biosynthesis Protein Met8

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Siroheme Biosynthesis Protein Met8
  Conformer 1
(PDB)
1kyq (B)
  Conformer 2
(PDB)
1kyq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 173 0.63   4 - 190
2 78 0.73   191 - 270

Sequence


           ________________________________________________________________________________________________________________________ 
 1kyq(B) : VKSLQLAHQLKDKRILLIGGGEVGLTRLYKLpTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIItCIPDHPESARI 
         :                                                                                                                          
 1kyq(A) : VKSLQLAHQLKDKRILLIGGGEVGLTRLYKLpTGCKLTLVSPDLHKSIIPKFGKFIQ-----------kRFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIItCIPDHPESARI 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________186_________________________________________________________ 
 1kyq(B) : YHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILISTNGLSPRFGALVRDEIRNLFTQgDLALEDAVVKLGELRRGIRLLAPDDKDVKYRdWARRCTDLFGIQHCHNIDVKRLL 
         :                                                                                                                          
 1kyq(A) : YHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILISTNGLSPRFGALVRDEIRNLFTQgDLALEDAVVKLGELRRGIRLLAPDDKDVKYRdWARRCTDLFGIQHCHNIDVKRLL 
           ____________________________________________________________186_________________________________________________________ 

           ___________________________                                                                                              
 1kyq(B) : DLFKVfQEQNCSLQFPPRERLLSEYCS                                                                                              
         :                                                                                                                          
 1kyq(A) : DLFKVfQEQNCSLQFPPRERLLSEYCS                                                                                              
           ___________________________                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.0
Translation
(A)
-0.7
Closure
(%)
73.8
Bending Residues
( green )
  186 - 191
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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