Site-Specific Recombinase Inti4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Site-Specific Recombinase Inti4
  Conformer 1
(PDB) 		2a3v (B)
  Conformer 2
(PDB) 		2a3v (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 197 1.57   104 - 300
2 91 1.76   4 - 94

Sequence


           _____________________________________________________________________________________87_________________________________ 
 2a3v(B) : MGSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP 
         :                                                                                                                          
 2a3v(C) : MGSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP 
           _____________________________________________________________________________________87_________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a3v(B) : KHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRH 
         :                                                                                                                          
 2a3v(C) : KHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________                                         
 2a3v(B) : HMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPLSRL                                         
         :                                                                                                                          
 2a3v(C) : HMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTH---rGASGVLSPLSRL                                         
           ________________________________________________________________________________                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.3
Translation
(A) 		0.7
Closure
(%) 		22.1
Bending Residues
( green ) 		  87 - 104
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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