Slam Family Member 6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Slam Family Member 6
  Conformer 1
(PDB) 		2if7 (B)
  Conformer 2
(PDB) 		2if7 (D)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 105 0.81   7 - 107   109 - 109   182 - 184
2 79 0.98   108 - 108   110 - 181   185 - 190

Sequence


           _______________________________________________________________________________________________________107______________ 
 2if7(B) : *LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQ 
         :                                                                                                                          
 2if7(D) : SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQ 
           _______________________________________________________________________________________________________107______________ 

           _________________________________________________________181____________                                                 
 2if7(B) : NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQKLCE                                                 
         :                                                                                                                          
 2if7(D) : NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQKLCE                                                 
           _________________________________________________________181____________                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.7
Translation
(A) 		0.1
Closure
(%) 		13.5
Bending Residues
( green ) 		  107 - 110
  181 - 182
  184 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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