Smg-7 Transcript Variant 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Smg-7 Transcript Variant 2
  Conformer 1
(PDB) 		1ya0 (B)
  Conformer 2
(PDB) 		1ya0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 304 0.8   180 - 495
2 146 1.32   3 - 179

Sequence


           ________________________________________________________________________________________________________________________ 
 1ya0(B) : MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCp 
         :                                                                                                                          
 1ya0(A) : MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT--------- 
           ________________________________________________________________________________________________________________________ 

           __________________________________179___________________________________________________________________________________ 
 1ya0(B) : QSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYL 
         :                                                                                                                          
 1ya0(A) : qSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYL 
           __________________________________179___________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ya0(B) : SKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQN--eESYNAYPLPAVKVSMDWLRLRPRVFQEAVV 
         :                                                                                                                          
 1ya0(A) : SKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNsQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVV 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________________             
 1ya0(B) : DERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDFSK--kEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDP             
         :                                                                                                                          
 1ya0(A) : DERQYIWPWLISLLNSFHPHEEDLs-ISATPLPEEFELQGFLALRPSFRNLDFSKGHkEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDP             
           ____________________________________________________________________________________________________________             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.5
Translation
(A) 		-0.3
Closure
(%) 		65.3
Bending Residues
( green ) 		  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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