Soluble Tumor Necrosis Factor Receptor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Soluble Tumor Necrosis Factor Receptor 1
  Conformer 1
(PDB) 		1ft4 (A)
  Conformer 2
(PDB) 		1ext (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 98 1.62   15 - 98   100 - 101   103 - 114
2 36 3.01   99 - 99   102 - 102   115 - 148

Sequence


           ______________________________________________________________________________________98_____________114________________ 
 1ft4(A) : MDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQ 
         :                                                                                                                          
 1ext(A) : **SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQ 
           ______________________________________________________________________________________98_____________114________________ 

           __________________________________________                                                                               
 1ft4(A) : EKQNTVCTCHAGFFLRENEC**********************                                                                               
         :                                                                                                                          
 1ext(A) : EKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIEN                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		62.8
Translation
(A) 		-0.5
Closure
(%) 		11.3
Bending Residues
( green ) 		  98 - 103
  114 - 115
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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