Spectrin Alpha Chain, Brain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Spectrin Alpha Chain, Brain
  Conformer 1
(PDB)
1u4q (B)
  Conformer 2
(PDB)
1cun (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 117 1.05   1772 - 1879   1939 - 1947
2 91 0.69   1880 - 1938   1948 - 1979

Sequence


           ________________________________________________________________________________________________________________________ 
 1u4q(B) : QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW 
         :                                                                                                                          
 1cun(B) : *********************************************************************************************************MVHQFFRDMDDEESW 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________1878__________________________ 
 1u4q(B) : IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYG 
         :                                                                                                                          
 1cun(B) : IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYG 
           ___________________________________________________________________________________________115__________________________ 

           _____________________________1937___1944______________________________________                                           
 1u4q(B) : DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS*                                           
         :                                                                                                                          
 1cun(B) : DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENSA                                           
           ______________________________174____181______________________________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.7
Translation
(A)
0.1
Closure
(%)
91.9
Bending Residues
( green )
  1878 - 1881
  1937 - 1939
  1944 - 1949
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download