Spectrin Alpha Chain, Brain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Spectrin Alpha Chain, Brain
  Conformer 1
(PDB) 		1u4q (B)
  Conformer 2
(PDB) 		1u5p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 108 1.17   1667 - 1772   1840 - 1841
2 96 0.71   1773 - 1839   1842 - 1870

Sequence


           ___________________________________________________________________________________________________________1772_________ 
 1u4q(B) : ***QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 
         :                                                                                                                          
 1u5p(A) : ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 
           ___________________________________________________________________________________________________________1772_________ 

           _____________________________________________________1838_______________________________________________________________ 
 1u4q(B) : ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 
         :                                                                                                                          
 1u5p(A) : ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE***************************** 
           _____________________________________________________1838_______________________________________________________________ 

           ________________________________________________________________________________                                         
 1u4q(B) : DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS                                         
         :                                                                                                                          
 1u5p(A) : ********************************************************************************                                         
           ________________________________________________________________________________                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.3
Translation
(A) 		0.4
Closure
(%) 		34.7
Bending Residues
( green ) 		  1772 - 1773
  1838 - 1844
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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