Ribosomal Protein L1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribosomal Protein L1
  Conformer 1
(PDB) 		2hgu (C)
  Conformer 2
(PDB) 		1zho (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 1.79   3 - 71   150 - 150   154 - 226
2 79 1.01   72 - 149   151 - 153

Sequence


           _________________________________________________________________67_____________________________________________________ 
 2hgu(C) : PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVM 
         :                                                                                                                          
 1zho(C) : PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW-dFDAVVATPDV- 
           _________________________________________________________________67_____________________________________________________ 

           __________________________149_153___________________________________________________________________________             
 2hgu(C) : GAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS             
         :                                                                                                                          
 1zho(C) : gAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTT-gPSVRINPHS             
           __________________________149_153___________________________________________________________________________             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.8
Translation
(A) 		-1.0
Closure
(%) 		27.6
Bending Residues
( green ) 		  67 - 73
  149 - 151
  153 - 154
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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