Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase
  Conformer 1
(PDB)
1o9l (A)
  Conformer 2
(PDB)
1m3e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 429 0.55   42 - 125   127 - 128   131 - 166   186 - 518
2 22 0.98   126 - 126   129 - 130   167 - 185

Sequence


           _______________________________________________________________________________121______________________________________ 
 1o9l(A) : TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTST 
         :                                                                                                                          
 1m3e(A) : TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKR-iSSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTST 
           ________________________________________________________________________________82______________________________________ 

           ___165_________________185______________________________________________________________________________________________ 
 1o9l(A) : GYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI 
         :                                                                                                                          
 1m3e(A) : GYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLP-cKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI 
           ___126_________________146______________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1o9l(A) : ERLSVRK----nVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYG 
         :                                                                                                                          
 1m3e(A) : ERLSVRKEEDdNVRERIIKRAALEFEDG-yANLGIGIPLLASNFISPN-tVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFA-iRGGHVNLT-lGA-qVSKYG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________         
 1o9l(A) : DLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT         
         :                                                                                                                          
 1m3e(A) : DLANW-iPGKLVKG-gGA-dLVSSAKTKVVVT-eHSAKGNAHKI-eKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIP-qQVTT         
           ________________________________________________________________________________________________________________         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.1
Translation
(A)
-0.4
Closure
(%)
97.8
Bending Residues
( green )
  121 - 132
  165 - 167
  185 - 186
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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