Succinyl-Coa Synthetase, Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa Synthetase, Beta Chain
  Conformer 1
(PDB)
1eud (B)
  Conformer 2
(PDB)
2fp4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 293 1.03   8 - 20   109 - 390
2 93 0.4   3 - 7   21 - 108

Sequence


           _____5_____________20____________________________________________________________________________________107____________ 
 1eud(B) : MVNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAI 
         :                                                                                                                          
 2fp4(B) : *MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAI 
           _____5_____________20____________________________________________________________________________________107____________ 

           ________________________________________________________________________________________________________________________ 
 1eud(B) : LMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 
         :                                                                                                                          
 2fp4(B) : LMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1eud(B) : DDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVN-aIIANGITKA-rELELKVPLVVRLEGT 
         :                                                                                                                          
 2fp4(B) : DDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 
           ________________________________________________________________________________________________________________________ 

           ___________________________________                                                                                      
 1eud(B) : NVHEAQNILTNSGLPITSAVDLEDAAKKAVASVTK                                                                                      
         :                                                                                                                          
 2fp4(B) : NVHEAQNILTNSGLPITSAVDLEDAAKKAVASVT*                                                                                      
           ___________________________________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.2
Translation
(A)
0.3
Closure
(%)
68.8
Bending Residues
( green )
  5 - 8
  20 - 22
  107 - 109
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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