DynDom - Protein Domain Motions

Succinyl-Coa Synthetase, Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Succinyl-Coa Synthetase, Beta Chain
Conformer 1 (PDB)	2fp4 (B)
Conformer 2 (PDB)	2fpi (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	348	0.85	3 - 326 347 - 355 377 - 391
2	41	0.88	327 - 346 356 - 376

Sequence

`________________________________________________________________________________________________________________________` `2fp4(B) : MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL` `:` `2fpi(B) : MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2fp4(B) : MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD` `:` `2fpi(B) : MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD` `________________________________________________________________________________________________________________________` `___________________________________________________________________________________326_________________346______355_____` `2fp4(B) : DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN` `:` `2fpi(B) : DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN` `___________________________________________________________________________________326_________________346______355_____` `_______370_______________________` `2fp4(B) : VHEAQNILTNSGLPITSAVDLEDAAKKAVASVT` `:` `2fpi(B) : VHEAQNILTNSGLPITSAVDLEDAAKKAVASVT` `_______370_______________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	13.1
Translation (A)	-0.3
Closure (%)	96.2
Bending Residues ( green )	326 - 327 346 - 347 355 - 357 370 - 377
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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