Sucrose-Phosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sucrose-Phosphatase
  Conformer 1
(PDB)
1s2o (A)
  Conformer 2
(PDB)
1tj5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 153 0.71   3 - 65   70 - 78   162 - 242
2 87 0.69   66 - 69   79 - 161

Sequence


           _______________________________________________________________65_______________________________________________________ 
 1s2o(A) : MRQLLLISDLDNTWVGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEPDYWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIADGFEALKPQSPLEQNPWKISYH 
         :                                                                                                                          
 1tj5(A) : MRQLLLISDLDNTWVGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEPDYWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIADGFEALKPQSPLEQNPWKISYH 
           _______________________________________________________________65_______________________________________________________ 

           _____________________________________160________________________________________________________________________________ 
 1s2o(A) : LDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGVIVRNAQPELLHWYDQWGDSRHYRAQSSHAGAILEAIAHF 
         :                                                                                                                          
 1tj5(A) : LDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGVIVRNAQPELLHWYDQWGDSRHYRAQSSHAGAILEAIAHF 
           _____________________________________160________________________________________________________________________________ 

           ____                                                                                                                     
 1s2o(A) : DFLS                                                                                                                     
         :                                                                                                                          
 1tj5(A) : DFLS                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.2
Translation
(A)
-0.1
Closure
(%)
90.5
Bending Residues
( green )
  65 - 81
  160 - 164
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download