Superoxide Dismutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Superoxide Dismutase
  Conformer 1
(PDB) 		1ues (C)
  Conformer 2
(PDB) 		1ues (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 0.39   407 - 433   475 - 589
2 45 0.42   403 - 406   434 - 474

Sequence


           ___406________________________433______________________________________474______________________________________________ 
 1ues(C) : MTHELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFG 
         :                                                                                                                          
 1ues(A) : MTHELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFG 
           _____6_________________________33_______________________________________74______________________________________________ 

           _______________________________________________________________________                                                  
 1ues(C) : SGWVWLASDANGKLSIEKEPNAGNPVRKGLNPLLTFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY                                                  
         :                                                                                                                          
 1ues(A) : SGWVWLASDANGKLSIEKEPNAGNPVRKGLNPLLTFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY                                                  
           _______________________________________________________________________                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.3
Translation
(A) 		0.2
Closure
(%) 		99.6
Bending Residues
( green ) 		  406 - 407
  433 - 434
  474 - 475
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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