Syntaxin 1A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Syntaxin 1A
  Conformer 1
(PDB) 		1dn1 (B)
  Conformer 2
(PDB) 		1ez3 (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 75 0.89   36 - 87   125 - 147
2 40 0.79   33 - 35   88 - 124

Sequence


           _______35__________________________________________________87__________________________________124______________________ 
 1dn1(B) : DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 
         :                                                                                                                          
 1ez3(B) : DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 
           _______35__________________________________________________87__________________________________124______________________ 

           ______________________________________________________________________________________________________                   
 1dn1(B) : GRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV                   
         :                                                                                                                          
 1ez3(B) : GRIQ**************************************************************************************************                   
           ______________________________________________________________________________________________________                   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.8
Translation
(A) 		0.1
Closure
(%) 		55.6
Bending Residues
( green ) 		  35 - 36
  87 - 88
  124 - 125
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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