Syntaxin 1A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Syntaxin 1A
  Conformer 1
(PDB)
1hvv (A)
  Conformer 2
(PDB)
1hvv (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 41 0.94   213 - 253
2 21 0.37   192 - 212

Sequence


           __________________210______________________________________________                                                      
 1hvv(A) : QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK                                                      
         :                                                                                                                          
 1hvv(C) : QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV*                                                      
           __________________210______________________________________________                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.4
Translation
(A)
-1.6
Closure
(%)
50.7
Bending Residues
( green )
  210 - 215
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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