Syntaxin 1A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Syntaxin 1A
  Conformer 1
(PDB)
1hvv (D)
  Conformer 2
(PDB)
1jth (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 33 0.81   218 - 250
2 23 0.83   195 - 217

Sequence


           _______________________216_________________________________________                                                      
 1hvv(D) : **SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK****                                                      
         :                                                                                                                          
 1jth(B) : ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY                                                      
           _______________________216_________________________________________                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
32.0
Translation
(A)
0.0
Closure
(%)
11.1
Bending Residues
( green )
  216 - 220
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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