Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)
  Conformer 1
(PDB)
1tbp (A)
  Conformer 2
(PDB)
1rm1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 0.94   70 - 159
2 86 0.59   63 - 69   160 - 238

Sequence


           _______69_______________________________________________________________________________________159_____________________ 
 1tbp(A) : MGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 
         :                                                                                                                          
 1rm1(A) : SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 
           _______69_______________________________________________________________________________________159_____________________ 

           ____________________________________________________________                                                             
 1tbp(A) : TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                             
         :                                                                                                                          
 1rm1(A) : TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                             
           ____________________________________________________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.5
Translation
(A)
0.6
Closure
(%)
100.0
Bending Residues
( green )
  69 - 70
  159 - 160
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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