T-Cell Receptor Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T-Cell Receptor Beta Chain
  Conformer 1
(PDB) 		2f54 (L)
  Conformer 2
(PDB) 		1qrn (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 125 0.59   107 - 107   116 - 239
2 111 1.18   4 - 106   108 - 115

Sequence


           _________________________________________________________________________________________________________106______115___ 
 2f54(L) : GVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCAS--SYVGNTGELFFGEGSRLTVLEDLKNVF 
         :                                                                                                                          
 1qrn(E) : GVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASRPGLAGGRPEQYFGPGTRLTVTEDLKNVF 
           _________________________________________________________________________________________________________112______120___ 

           ________________________________________________________________________________________________________________________ 
 2f54(L) : PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWG 
         :                                                                                                                          
 1qrn(E) : PPEVAVFEPSAEEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWG 
           ________________________________________________________________________________________________________________________ 

           ___                                                                                                                      
 2f54(L) : RAD                                                                                                                      
         :                                                                                                                          
 1qrn(E) : RAD                                                                                                                      
           ___                                                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.7
Translation
(A) 		-0.6
Closure
(%) 		92.2
Bending Residues
( green ) 		  106 - 108
  115 - 116
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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