T-Cell Surface Glycoprotein Cd1d

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T-Cell Surface Glycoprotein Cd1d
  Conformer 1
(PDB) 		1zt4 (C)
  Conformer 2
(PDB) 		1zt4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 174 0.91   8 - 181
2 94 1.18   182 - 275

Sequence


           ________________________________________________________________________________________________________________________ 
 1zt4(C) : PQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDI 
         :                                                                                                                          
 1zt4(A) : **RLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDI 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________180_______________________________________________________________ 
 1zt4(C) : LSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETW 
         :                                                                                                                          
 1zt4(A) : LSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETW 
           ______________________________________________________180_______________________________________________________________ 

           ______________________________________                                                                                   
 1zt4(C) : YLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSY                                                                                   
         :                                                                                                                          
 1zt4(A) : YLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYW****                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.9
Translation
(A) 		0.2
Closure
(%) 		12.5
Bending Residues
( green ) 		  180 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download