Tcr 5E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tcr 5E
  Conformer 1
(PDB) 		2cdf (B)
  Conformer 2
(PDB) 		2eyr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 125 0.49   118 - 242
2 111 1.44   6 - 117

Sequence


           _______________________________________________________________________________________________________________115______ 
 2cdf(B) : EADIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASSEFRDGNEKLFFGSGTQLSVLEDLNKV 
         :                                                                                                                          
 2eyr(B) : **DIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASTS-RRGSYEQYFGPGTRLTVTEDLKNV 
           _______________________________________________________________________________________________________________117______ 

           ________________________________________________________________________________________________________________________ 
 2cdf(B) : FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAW 
         :                                                                                                                          
 2eyr(B) : FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAW 
           ________________________________________________________________________________________________________________________ 

           ____                                                                                                                     
 2cdf(B) : GRAD                                                                                                                     
         :                                                                                                                          
 2eyr(B) : GRAD                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.1
Translation
(A) 		0.8
Closure
(%) 		37.4
Bending Residues
( green ) 		  115 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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