Tena Homolog/thi-4 Thiaminase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tena Homolog/thi-4 Thiaminase
  Conformer 1
(PDB) 		2gm7 (D)
  Conformer 2
(PDB) 		2gm8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 0.6   3 - 41   59 - 61   81 - 210
2 36 0.48   42 - 58   62 - 80

Sequence


           ___________________________________________41_______________58__________________78______________________________________ 
 2gm7(D) : HHHHGVTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLK 
         :                                                                                                                          
 2gm8(B) : ***HGVTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLK 
           ___________________________________________41_______________58__________________78______________________________________ 

           ________________________________________________________________________________________________                         
 2gm7(D) : STCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGLSAEELWPYFKEASLYELEFWQAAYEGH                         
         :                                                                                                                          
 2gm8(B) : STCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGLSAEELWPYFKEASLYELEFWQAAYEGH                         
           ________________________________________________________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.6
Translation
(A) 		0.0
Closure
(%) 		52.1
Bending Residues
( green ) 		  41 - 46
  58 - 62
  78 - 92
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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