Thiol:disulfide Interchange Protein Dsbc

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thiol:disulfide Interchange Protein Dsbc
  Conformer 1
(PDB) 		1jzd (A)
  Conformer 2
(PDB) 		1eej (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 0.68   68 - 213
2 65 1.62   3 - 67

Sequence


           _____________________________________________________________________67_________________________________________________ 
 1jzd(A) : GAMADDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYSHKLHEQMADYNALGI 
         :                                                                                                                          
 1eej(B) : ****DDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGI 
           _____________________________________________________________________67_________________________________________________ 

           ____________________________________________________________________________________________________                     
 1jzd(A) : TVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSG*                     
         :                                                                                                                          
 1eej(B) : TVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSGK                     
           ____________________________________________________________________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		35.4
Translation
(A) 		0.8
Closure
(%) 		88.3
Bending Residues
( green ) 		  67 - 68
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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