Tick-Borne Encephalitis Virus Glycoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tick-Borne Encephalitis Virus Glycoprotein
  Conformer 1
(PDB) 		1svb  
  Conformer 2
(PDB) 		1urz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 269 3.55   8 - 14   20 - 294
2 107 6.55   5 - 7   15 - 19   295 - 393

Sequence


           ____5___________________________________________________________________________________________________________________ 
 1svb    : SRCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAA 
         :                                                                                                                          
 1urz(B) : *RCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAA 
           ____5___________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1svb    : CEAKKKATGHVYDANKIVYTVKVEPHTGDYVAANETHSGRKTASFTISSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAER 
         :                                                                                                                          
 1urz(B) : CEAKKKATGHVYDANKIVYTVKVEPHT------------rKTASFTISSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEH-pTAWQVHRDWFNDLALPWKHEGAQNWNNAER 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________294__________________________________________________________________ 
 1svb    : LVEFGAPHAVKMDVYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITP 
         :                                                                                                                          
 1urz(B) : LVEFGAPHAVKMDVYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITP 
           ___________________________________________________294__________________________________________________________________ 

           _________________________________________                                                                                
 1svb    : NPTIENNGGGFIEMQLPPGDNIIYVGELSHQWFQK******                                                                                
         :                                                                                                                          
 1urz(B) : NPTIENNGGGFIEMQLPPGDNIIYVGELSHQWFQKGSSIGR                                                                                
           _________________________________________                                                                                

Morph
Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		66.0
Translation
(A) 		-0.1
Closure
(%) 		94.3
Bending Residues
( green ) 		  5 - 20
  294 - 295
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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