Toxin A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Toxin A
  Conformer 1
(PDB) 		2g7c (B)
  Conformer 2
(PDB) 		2g7c (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 164 0.73   15 - 165   178 - 190
2 77 0.32   166 - 177   191 - 255

Sequence


           ________________________________________________________________________________________________________________________ 
 2g7c(B) : SKAVTGMRTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGW 
         :                                                                                                                          
 2g7c(A) : *****GMRTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGW 
           ________________________________________________________________________________________________________________________ 

           ___________________________________165_________177__________190_________________________________________________________ 
 2g7c(B) : VTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVI 
         :                                                                                                                          
 2g7c(A) : VTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVI 
           ___________________________________165_________177__________190_________________________________________________________ 

           ______________                                                                                                           
 2g7c(B) : YFFGVDGVKAPGIY                                                                                                           
         :                                                                                                                          
 2g7c(A) : YFFGVDGVKA****                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.3
Translation
(A) 		0.3
Closure
(%) 		88.3
Bending Residues
( green ) 		  165 - 169
  177 - 178
  190 - 191
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download