Transaldolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transaldolase
  Conformer 1
(PDB) 		2cwn (B)
  Conformer 2
(PDB) 		1f05 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 276 1.15   15 - 59   85 - 323
2 32 0.38   60 - 84   324 - 330

Sequence


           _______________________________________________59_______________________84______________________________________________ 
 2cwn(B) : **SALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYK 
         :                                                                                                                          
 1f05(A) : MESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYK 
           _______________________________________________59_______________________84______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cwn(B) : EAGVGKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANqG--------DPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGC 
         :                                                                                                                          
 1f05(A) : EAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGC 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________315_________________                                       
 2cwn(B) : DFLTISPKLLGELLKDNSKLAPALSVKAAQTSDSEKIHLDEKAFRWLHNEDQMAVEKLSDGIRKFAADAIKLERMLTERMFS                                       
         :                                                                                                                          
 1f05(A) : DFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNEDQMAVEKLSDGIRKFAADAVKLERMLTERMFN                                       
           ______________________________________________________________315_________________                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.7
Translation
(A) 		-0.2
Closure
(%) 		29.9
Bending Residues
( green ) 		  59 - 60
  84 - 85
  315 - 326
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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