Nf-Kappa-B P65

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nf-Kappa-B P65
  Conformer 1
(PDB)
2ram (B)
  Conformer 2
(PDB)
1vkx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 1.01   21 - 187
2 101 0.79   188 - 288

Sequence


           ________________________________________________________________________________________________________________________ 
 2ram(B) : PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNN 
         :                                                                                                                          
 1vkx(A) : AYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNN 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________187_______________________________________________________________________ 
 2ram(B) : NPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYA 
         :                                                                                                                          
 1vkx(A) : NPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYA 
           ______________________________________________187_______________________________________________________________________ 

           _________________________________                                                                                        
 2ram(B) : DPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD                                                                                        
         :                                                                                                                          
 1vkx(A) : DPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD                                                                                        
           _________________________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.7
Translation
(A)
0.2
Closure
(%)
37.4
Bending Residues
( green )
  187 - 191
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download