Transcription Factor Pap1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcription Factor Pap1
  Conformer 1
(PDB) 		1gd2 (G)
  Conformer 2
(PDB) 		1gd2 (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 30 0.41   79 - 108
2 29 0.71   109 - 137

Sequence


           ___________________________105___________________________________                                                        
 1gd2(G) : QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL*                                                        
         :                                                                                                                          
 1gd2(F) : *EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK                                                        
           ___________________________105___________________________________                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		29.9
Translation
(A) 		-0.8
Closure
(%) 		93.9
Bending Residues
( green ) 		  105 - 110
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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