Translation Elongation Factor P

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Translation Elongation Factor P
  Conformer 1
(PDB) 		1yby (B)
  Conformer 2
(PDB) 		1yby (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 110 2.73   64 - 183
2 57 0.99   4 - 63

Sequence


           ___________________________________________________________63___________________________________________________________ 
 1yby(B) : ISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKpKAHIERKDqYLYNDGDLYYFdTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIE 
         :                                                                                                                          
 1yby(A) : ISAGDFKNGVTFELDGQIFQVIEFQHVKPg--AAFVRTKLKNIVTGATIEKTFNPTDKpKAHIERKDqYLYNDGDLYYFdTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIE 
           ___________________________________________________________63___________________________________________________________ 

           _____________________________________________________                                                                    
 1yby(B) : PPNFVELEVTDTEPGFaTKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYeRV                                                                    
         :                                                                                                                          
 1yby(A) : PPNFVELEVTDTtATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYeRV                                                                    
           _____________________________________________________                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		63.2
Translation
(A) 		0.8
Closure
(%) 		89.5
Bending Residues
( green ) 		  63 - 64
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download