Transcription Initiation Factor IIb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcription Initiation Factor IIb
  Conformer 1
(PDB)
1d3u (B)
  Conformer 2
(PDB)
1ais (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 98 0.91   1110 - 1207
2 91 0.63   1208 - 1298

Sequence


           ________________________________________________________________________________________________________1207____________ 
 1d3u(B) : MVSDAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 
         :                                                                                                                          
 1ais(B) : ********NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 
           ________________________________________________________________________________________________________1207____________ 

           _________________________________________________________________________________                                        
 1d3u(B) : GLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVPIA                                        
         :                                                                                                                          
 1ais(B) : GLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVPIA                                        
           _________________________________________________________________________________                                        

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.4
Translation
(A)
1.6
Closure
(%)
89.5
Bending Residues
( green )
  1207 - 1212
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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