Transcriptional Activator, Putative, Baf Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Activator, Putative, Baf Family
  Conformer 1
(PDB) 		2nrh (B)
  Conformer 2
(PDB) 		2nrh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 106 0.89   67 - 71   80 - 191
2 79 0.45   3 - 66   72 - 79   192 - 205

Sequence


           __________________________________________________________63______71______79____________________________________________ 
 2nrh(B) : LLLCDIGNSNANFLDkYFTLNIDQFLEFKNqKIFYINVNEHLKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNSIHLGGFILPGIANYKKIYSHI 
         :                                                                                                                          
 2nrh(A) : LLLCDIGNSNANFLDkYFTLNIDQFLEF----iFYINVNEHLKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDI----IhLGGFILPGIANYKKIYSHI 
           __________________________________________________________63______71______79____________________________________________ 

           ______________________________________________________________191_________________                                       
 2nrh(B) : SPRLfNTQVSLDAFPQKTMDALSYGVFKGIYLLIKDAA--kKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNL*                                       
         :                                                                                                                          
 2nrh(A) : SP--fNTQVSLDAFPQKTMDALSYGVFKGIYLLIKDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLL                                       
           ______________________________________________________________191_________________                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.6
Translation
(A) 		-0.2
Closure
(%) 		96.1
Bending Residues
( green ) 		  63 - 67
  71 - 74
  79 - 80
  191 - 192
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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