Transcriptional Regulator, Tetr Family Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator, Tetr Family Protein
  Conformer 1
(PDB)
2nx4 (A)
  Conformer 2
(PDB)
2nx4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 136 0.58   50 - 51   54 - 187
2 48 0.64   4 - 49   52 - 53

Sequence


           ______________________________________________47________________________________________________________________________ 
 2nx4(A) : GVPKLVDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDATGLDALRILCREVMPINEEQLLEARIAASLWPRAMYDEQM 
         :                                                                                                                          
 2nx4(B) : GVPKLVDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDATGLDALRILCREVMPINEEQLLEARIAASLWPRAMYDEQM 
           ______________________________________________47________________________________________________________________________ 

           __________________________________________________________________________                                               
 2nx4(A) : AATNRRTMDNWREQMAIFLEQAREEGSVGDIDVTIVVEQLLNMMMGMQILGVLTPGETSSERQLEMLEQFVAAL                                               
         :                                                                                                                          
 2nx4(B) : AATNRRTMDNWREQMAIFLEQAREEGSVGDIDVTIVVEQLLNMMMGMQILGVLTPGETSSERQLEMLEQFVAAL                                               
           __________________________________________________________________________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.5
Translation
(A)
-0.6
Closure
(%)
39.7
Bending Residues
( green )
  47 - 54
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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