Transcriptional Regulator, Tetr Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator, Tetr Family
  Conformer 1
(PDB) 		1zkg (A)
  Conformer 2
(PDB) 		1z77 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 103 1.24   62 - 94   123 - 197
2 85 0.96   4 - 61   95 - 122

Sequence


           _________________________________________________________60______________________________94_________________________122_ 
 1zkg(A) : VLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYsVTEKLQKEFENFLkNRNRDIFDFeRWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEK 
         :                                                                                                                          
 1z77(A) : *LSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYsVTEKLQKEFENFLkNRNRDIFDFeRWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEK 
           _________________________________________________________60______________________________94_________________________122_ 

           _________________________________________________________________________                                                
 1zkg(A) : SQRVFFDFVREKLKDLDLAEDVTEEIALKFLwFFSGFEEVYLRTYQGKPELLKRDnTLVEEVKVlRILKKGtK                                                
         :                                                                                                                          
 1z77(A) : SQRVFFDFVREKLKDLDLAEDVTEEIALKFLwFFSGFEEVYLRTYQGKPELLKRDnTLVEEVKVlRILKKGtK                                                
           _________________________________________________________________________                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.8
Translation
(A) 		-0.7
Closure
(%) 		94.3
Bending Residues
( green ) 		  60 - 62
  94 - 95
  122 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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